DreEX0045790 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14050508-14061454:+
Coord C1 exon
chr11:14050508-14050677
Coord A exon
chr11:14054598-14055029
Coord C2 exon
chr11:14061349-14061454
Length
432 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTCTTGCTTTTCAGTCT
3' ss Score
10.35
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAG
Seq A exon
TCTGGCTCAACGAACTTTGGAGAGAAATTTTCCCGGGTTAAGTTTTCCCCGTCTCTGACGTTATTTGGTGGAAAACCCATGGAGGGATGGTTAGCAGTGACAGTGAGCGGCCTGGTGACTGTGTCCTTATTAAAGCCAAATGGGACTTTGTTGACAGCCAGTGAGAGCCTGTGCAGACTGAGGGGTCGTGTGGCCCTAGCAGACATCGCCTTTACTGGTGGTGGGAATATAGTCGTGGCGGCCACAGATGGCAGCAGCTCCTCTCCGGTGCAGTTCTATAAAGTGTGTGTGAGTGTGGTGAATGAGAAGTGCCGCATCGACACTGAGCTCCTTCCCTCACTGTTCATGCGCTGCACCACCGACCCATTGCGGAGAGACAAGTACCCTGCTGTCACACACCTTAAATTCCTCACGCGAGAGAACTCAGAACAG
Seq C2 exon
GTCCTGCTCTGTGCATCTAGTCAGATGGGCAGCATTGTTGAGTGCTGGTCCTTGCGCAAGGAGGGTCTCCCTGTTAACAATATCTTTCAACACCGATCACCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779_MULTIEX1-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
A:
PF116353=Med16=FE(19.9=100)
C2:
PF116353=Med16=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGGTTGTTGTCTGCTGA
R:
CACTGGTGATCGGTGTTGAAAGA
Band lengths:
275-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]