MmuEX0028511 @ mm9
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79365168-79369679:-
Coord C1 exon
chr10:79369510-79369679
Coord A exon
chr10:79365742-79366173
Coord C2 exon
chr10:79365168-79365273
Length
432 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCCCCTCCCACAGTCT
3' ss Score
11.06
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTCCCGGCTACTGTCTGCTGATGCTGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGCTGGCCCTGCATGTGGAGAAG
Seq A exon
TCTGGTGCCTCTAGCTTCGGAGAGAAGTTCTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGCTGCGTGGTAGAGTGGCGCTGGCTGACATCGCCTTCACGGGCGGTGGGAACATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCGTCAGCGTGGTCAGCGAGAAGTGCCGCATCGACACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGACATGTCTGAGCAG
Seq C2 exon
GTGCTCCTGTGTGCGTCCAGCCAGACCAGCAGCCTGGTGGAATGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATCTCGCCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'5-6,'5-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(26.3=52.6)
A:
PF116353=Med16=FE(20.0=100)
C2:
PF116353=Med16=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGCTACTGTCTGCTG
R:
AGGCGAGATCTGCTGGAAGAT
Band lengths:
270-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: