MmuEX0028507 @ mm10
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79907039-79908921:-
Coord C1 exon
chr10:79908818-79908921
Coord A exon
chr10:79907491-79907656
Coord C2 exon
chr10:79907039-79907146
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTCCCTTTTCCCCAGGAG
3' ss Score
11.07
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCGAGGGGGCCGGCGCGGGCCTAGAGATGGCGGCGTCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCGGGCCGACTGGGCGCCCGGGGCGGACAG
Seq A exon
GAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTGTGCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCTTGTGCCTGGTCCTGCAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGG
Seq C2 exon
ATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=PU(56.4=59.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGGGCCTAGAGATGG
R:
CTGGTCCCACTCCAGGCAG
Band lengths:
196-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types