BtaEX6040696 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51339618-51341492:-
Coord C1 exon
chr7:51341447-51341492
Coord A exon
chr7:51339846-51339879
Coord C2 exon
chr7:51339618-51339707
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTGATCTACAGGAA
3' ss Score
10.58
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTCATTTGGAGTCTACAGGACCTGAGCAAGTACGGTTAGCTGGAAT
Seq A exon
GAATTACCGCCAACATCTTATAAAATGTAGCCCA
Seq C2 exon
GCACAGCTGTTTTGTAGCACTCCGAATGCCTTGGAGCATGGCCGCAGGAAGAAAGATGCAATATGTGGCTCATCTGCAAATAAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-'10-6,'10-4,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(21.1=100)
A:
PF066178=M-inducer_phosp=FE(15.5=100)
C2:
PF066178=M-inducer_phosp=FE(40.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCTACAGGACCTGAGCA
R:
TGCAGATGAGCCACATATTGCA
Band lengths:
117-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]