HsaEX0014016 @ hg38
Exon Skipping
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138325815-138328529:-
Coord C1 exon
chr5:138328484-138328529
Coord A exon
chr5:138326021-138326054
Coord C2 exon
chr5:138325815-138325904
Length
34 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGTTTTAATCTGCAGGAA
3' ss Score
8.93
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTCACCTGGATTCTTCAGGACTTCAGGAAGTGCATTTAGCTGGGAT
Seq A exon
GAATCATGACCAGCACCTAATGAAATGTAGCCCA
Seq C2 exon
GCACAGCTTCTTTGTAGCACTCCGAATGGTTTGGACCGTGGCCATAGAAAGAGAGATGCAATGTGTAGTTCATCTGCAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402-'5-16,'5-14,6-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=0.500 C2=0.700
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(23.1=100)
A:
PF066178=M-inducer_phosp=FE(16.9=100)
C2:
PF066178=M-inducer_phosp=FE(44.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTGGATTCTTCAGGACT
R:
TGCAGATGAACTACACATTGCA
Band lengths:
124-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development