RnoEX0018924 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27543853-27546424:-
Coord C1 exon
chr18:27546379-27546424
Coord A exon
chr18:27544181-27544214
Coord C2 exon
chr18:27543853-27543942
Length
34 bp
Sequences
Splice sites
3' ss Seq
TAGTGCTTGTTTTTGTTCAGGGA
3' ss Score
5.92
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTTCCTTGGACTCCTCAGGACCTCAGGATATTCACTTAACTGGCAA
Seq A exon
GGATTTTCACCAGGACCTTATGAAAGGCATCCCA
Seq C2 exon
GCACAGCTTCTCTGTAGTACTCCAAATGCTTTGGATCATGGCCACAGAAGGAAGGATGCAAAGTGTAGCACATCTGCAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.333 C2=0.600
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(8.7=100)
A:
PF066178=M-inducer_phosp=FE(6.4=100)
C2:
PF066178=M-inducer_phosp=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTGGACTCCTCAGGACC
R:
TGCTACACTTTGCATCCTTCCT
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]