BtaEX6041236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63214478-63218200:-
Coord C1 exon
chr7:63218093-63218200
Coord A exon
chr7:63216046-63216155
Coord C2 exon
chr7:63214478-63214565
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGACTGCCCTTCCAGACC
3' ss Score
8.68
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCCCTGGTGCGGTTCATGTATTCCCTGAGTAAGGGCTACCGCAGGATCACCTACCACAACTGGCGGCACGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGGTG
Seq A exon
ACCGGAAAGCTGAAGCGATACTTCACAGACCTGGAGGCCTTGGCCATGGTCACCGCCGCCTTCTGCCACGACATTGACCACAGAGGCACTAACAATCTCTACCAGATGAA
Seq C2 exon
ATCCCAGAACCCACTGGCCAAGCTCCATGGGTCCTCCATCTTGGAAAGACACCACTTGGAGTTTGGTAAAACACTCTTGAGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.2=50.0)
A:
PF0023314=PDEase_I=FE(14.5=100)
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTGCGGTTCATGTATT
R:
TCATCTCTCAAGAGTGTTTTACCA
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]