MmuEX6001891 @ mm9
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61417860-61423664:+
Coord C1 exon
chr18:61417860-61417967
Coord A exon
chr18:61422070-61422179
Coord C2 exon
chr18:61423577-61423664
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACCTCTCATCTCCTTCCAGACA
3' ss Score
9.3
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCCCTGGTGCGCTTCATGTATTCGCTAAGCAAAGGCTACCGGAGAATCACTTACCACAACTGGCGGCATGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGGTG
Seq A exon
ACAGGAAAGCTGAAACGGTACTTCACTGATCTAGAGGCCTTGGCCATGGTCACTGCTGCCTTCTGTCATGACATCGACCACAGAGGCACGAACAACCTCTACCAGATGAA
Seq C2 exon
ATCACAGAACCCCCTGGCCAAGCTCCATGGGTCCTCCATCTTGGAAAGGCATCATTTGGAGTTTGGCAAAACACTCCTGAGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.2=50.0)
A:
PF0023314=PDEase_I=FE(14.5=100)
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTGCGCTTCATGTATT
R:
TCATCTCTCAGGAGTGTTTTGCC
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: