GgaEX6050550 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53319689-53322031:-
Coord C1 exon
chrZ:53321924-53322031
Coord A exon
chrZ:53320706-53320815
Coord C2 exon
chrZ:53319689-53319776
Length
110 bp
Sequences
Splice sites
3' ss Seq
CGCACATTTTCACCCTCCAGACT
3' ss Score
7.29
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTTCTGGTGAGGTTTGTGTACTCTGTCAGTAAGGGCTACCGGAAGATAACGTACCACAACTGGCGCCATGGCTTCAATGTTGCACAGACCATGTTCACACTTCTCATG
Seq A exon
ACTGGCAAACTGAAACGCTACTACACAGACCTTGAAGCCTTTGCAATGGTAACTGCTGCTCTGTGCCATGATATAGACCACAGAGGAACCAACAACCTCTACCAGATGAA
Seq C2 exon
ATCTCAAAATCCTTTAGCTAAACTTCATGGATCCTCAATTTTAGAGAGGCATCACCTGGATTTTGGAAAGTTTTTGCTCTCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.2=50.0)
A:
PF0023314=PDEase_I=FE(14.5=100)
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGAGGTTTGTGTACTCTG
R:
CTCTTCAGAGAGCAAAAACTTTCCA
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]