MmuEX6019414 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108426454-108427194:+
Coord C1 exon
chr5:108426454-108426561
Coord A exon
chr5:108426798-108426907
Coord C2 exon
chr5:108427107-108427194
Length
110 bp
Sequences
Splice sites
3' ss Seq
GACTGGATCTATTCCCACAGACA
3' ss Score
7.5
5' ss Seq
GAAGTAGGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
GTCTTGGTGCGCTTTCTATTCTCTGTCAGCAAAGCCTATCGAAGAATCACCTACCACAACTGGCGCCACGGCTTCAATGTAGCCCAGACCATGTTTACCCTACTCATG
Seq A exon
ACAGGCAAACTGAAGAGCTATTACACTGACCTAGAGGCCTTCGCCATGGTTACAGCTGGCTTGTGCCACGACATCGACCACCGTGGCACCAACAACCTGTACCAGATGAA
Seq C2 exon
ATCGCAGAATCCTCTAGCCAAGTTACATGGCTCCTCAATTCTGGAAAGGCACCACCTGGAATTTGGGAAGTTTCTGTTGGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'25-25,'25-23,29-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(7.2=50.0)
A:
PF0023314=PDEase_I=FE(14.5=100)
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCGCTTTCTATTCTCTGT
R:
TGCCAACAGAAACTTCCCAAA
Band lengths:
186-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types