BtaEX6042952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9729849-9732999:-
Coord C1 exon
chr11:9732851-9732999
Coord A exon
chr11:9732474-9732593
Coord C2 exon
chr11:9729849-9729944
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGCCCAACTTCTCCTTACAGCTC
3' ss Score
8.55
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGAAAGGAGACTTCCTTGCCTTGGACCTTGGGGGTACCAATTTCCGGGTCCTGCTGGTGCGTGTGAGGAATGGGAAGCGACGCGGGGTGGAGATGCACAACAAGATCTACTCTATCCCACAGGAGGTCATGCATGGCACAGGGGACGAG
Seq A exon
CTCTTCGACCACATCGTCCAGTGCATTGCAGACTTCCTGGAGTACATGGGCATGAAGGGTGTGTCCCTGCCTCTAGGTTTCACTTTCTCCTTCCCCTGCCAGCAGAACAGCCTGGACGAG
Seq C2 exon
AGCATCCTCCTGAAGTGGACTAAAGGCTTCAAGGCGTCTGGCTGCGAGGGTGAGGACGTAGTTATGCTGCTGAAGGAAGCCATCCACCGGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTTCCTTGCCTTGGAC
R:
CCGGTGGATGGCTTCCTTCA
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]