DreEX0037686 @ danRer10
Exon Skipping
Gene
ENSDARG00000101482 | hk2
Description
hexokinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2017]
Coordinates
chr5:13468009-13475537:+
Coord C1 exon
chr5:13468009-13468157
Coord A exon
chr5:13473194-13473313
Coord C2 exon
chr5:13475442-13475537
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTGAATGGTTTTCTGCAGTTG
3' ss Score
6.11
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCGTGGTGATTTCTTGGCATTGGATCTGGGCGGCACAAACTTCAGGGTGCTCTTGGTGCGCGTTCGAGGTGGGAAAAGACGAAACGTGGAGATGAATAATAAGATCTACACCATCCCTCAAGACATTACGCAAGGCACAGGCGAGGAG
Seq A exon
TTGTTTGATCACATAGTGCACTGTATCGCTGACTTCTTGGAGTACATGGGGATGAAGGGGGCTTCACTTCCTCTTGGATTTACCTTCTCATTTCCCTGCCATCAGGACAAACTTGACCAG
Seq C2 exon
GGTATCCTGATAAAGTGGACAAAGGGCTTCAAGGCCTCGGGTTGTGAAGGAGAAGATGTGGCATCCTTGCTGAAAGATGCCATTCATCGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101482_MULTIEX1-10/12=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGGTGATTTCTTGGCAT
R:
CTCACAGCGATGAATGGCAT
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]