MmuEX6005036 @ mm9
Exon Skipping
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82682095-82685389:-
Coord C1 exon
chr6:82685241-82685389
Coord A exon
chr6:82684842-82684961
Coord C2 exon
chr6:82682095-82682190
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGCCCTTTGTTTTCACAGCTT
3' ss Score
8.9
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGAAAGGAGACTTCCTGGCCTTGGATCTTGGAGGAACAAACTTCCGGGTCCTGCTGGTGCGCGTGCGTAATGGCAAGCGAAGGGGCGTAGAGATGCATAACAAGATCTACTCCATCCCACAGGAAGTCATGCATGGCACTGGAGAAGAG
Seq A exon
CTTTTCGACCACATTGTCCAGTGCATCGCGGACTTCCTTGAGTACATGGGCATGAAGGGCGTGTCCCTACCTTTGGGTTTCACCTTCTCCTTCCCTTGCCAGCAGAACAGCCTGGACCAG
Seq C2 exon
AGCATCCTCCTCAAGTGGACAAAGGGATTCAAGGCATCCGGCTGCGAGGGTGAAGATGTGGTCACCTTGCTGAAGGAAGCCATTCGCCGGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTTCCTGGCCTTGGAT
R:
CCGGCGAATGGCTTCCTTC
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: