BtaEX6044945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68710499-68712732:+
Coord C1 exon
chr11:68710499-68710567
Coord A exon
chr11:68711728-68711806
Coord C2 exon
chr11:68712616-68712732
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTGTGTTCTTCCCAGGAG
3' ss Score
9.41
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTAACGCATCCGGCACTGTGAGTATCCAGGAATTCAGGGACCTGTGGAAGCAGCTGATGTTCTATCAG
Seq A exon
GAGGTTTTCCACAAGCAAGACACTAACCGGTCAGGATCCCTGAATTGGGCCCAACTGCGGGCTGCCATGAGGGAGGCAG
Seq C2 exon
GAATCATGCTCAGTGATGACGTCTGCCAGCTGATGCTTATCCGCTACGGCGGCCCCGACCTCCAGATGAACTTCGTCAGGTTTGTCCGCTTGATGCTGCGTGTGGAGAACATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(62.1=78.3),PF134051=EF-hand_6=PU(8.6=13.0)
A:
PF134051=EF-hand_6=FE(74.3=100)
C2:
PF134051=EF-hand_6=PD(11.4=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGCACTGTGAGTATCCA
R:
TTCTCCACACGCAGCATCAAG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]