HsaEX6012759 @ hg19
Exon Skipping
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31399892-31401445:-
Coord C1 exon
chr2:31401377-31401445
Coord A exon
chr2:31400612-31400687
Coord C2 exon
chr2:31399892-31400008
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTGGTTCTTTGCAGAAG
3' ss Score
9.69
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTAATGCATCAGGTACTATGAGCATCCAGGAATTCAGGGACCTGTGGAAGCAGCTGAAGCTCTCTCAG
Seq A exon
AAGGTTTTCCACAAGCAAGACCGTGGGTCAGGATACCTGAACTGGGAGCAGCTGCACGCTGCCATGAGGGAGGCAG
Seq C2 exon
GAATCATGCTCAGTGATGACGTCTGTCAGCTGATGCTCATCCGCTACGGCGGCCCCCGCCTCCAGATGGACTTTGTCAGTTTCATCCACTTGATGCTGCGTGTAGAGAACATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-'20-21,'20-20,21-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(62.1=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATCCAGGAATTCAGGGA
R:
CCTCCATGTTCTCTACACGCA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)