GgaEX6028694 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7650983-7652358:+
Coord C1 exon
chr3:7650983-7651051
Coord A exon
chr3:7651165-7651243
Coord C2 exon
chr3:7652242-7652358
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTTGATTGTTTCCACCAGGAG
3' ss Score
8.69
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGAATGCCTCTGGCACACTGAGTATCCAAGAGTTCCGAGTCCTGTGGAAAAGGCTGCTTTTCTACTTG
Seq A exon
GAGGTTTTCCAGAAAAGAGACACTAGCAGATCAGGAAAGCTTGACCTGGTAGAACTGCGTGCAGCTGTACAGGAGACAG
Seq C2 exon
GTATTTCACTCAGCAATGAAGTCTGTAATTTGATGGCGATCAGATATGGTGACCCTGACTTGAAGATCAGCTTTGAGAGCTTCATGTGTTTCATGCTTCGAGTAGAGATCATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(31.0=78.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGCACACTGAGTATCC
R:
TCCCATGATCTCTACTCGAAGCA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]