GgaEX6028695 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7650484-7651243:+
Coord C1 exon
chr3:7650484-7650548
Coord A exon
chr3:7650983-7651051
Coord C2 exon
chr3:7651165-7651243
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACCTTAATTATTCCATGAAGCTG
3' ss Score
4.02
5' ss Seq
TTGGTATAG
5' ss Score
0.83
Exon sequences
Seq C1 exon
ATTTTCAGAGTTTTCGCCTGAGTTTCAGTCTGGACGCCTGCCAGAGTATCCTGGCACTCCTGGAT
Seq A exon
CTGAATGCCTCTGGCACACTGAGTATCCAAGAGTTCCGAGTCCTGTGGAAAAGGCTGCTTTTCTACTTG
Seq C2 exon
GAGGTTTTCCAGAAAAGAGACACTAGCAGATCAGGAAAGCTTGACCTGGTAGAACTGCGTGCAGCTGTACAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(36.2=100)
A:
PF138331=EF-hand_8=PD(31.0=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCAGAGTTTTCGCCTGAGT
R:
CTGTCTCCTGTACAGCTGCAC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]