DreEX6056038 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45353040-45355574:+
Coord C1 exon
chr17:45353040-45353104
Coord A exon
chr17:45355346-45355414
Coord C2 exon
chr17:45355496-45355574
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTAATCTGAACCACACAGATG
3' ss Score
3.88
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
ACAAGGACATTCACACCGAGAGCTTCAGTCGAGAGTGCTGTAGAAGCATGATTGCCCTCATGGAC
Seq A exon
ATGGATGGAACAGGAAGACTTAACCTGCAAGAGTTTAGACAATTGTGGAACAAAATCAAACAGTGGCAG
Seq C2 exon
GAAATCTTTAAGCGCTATGACTTTGATCATAATGACACTATCAGCAGCTATGAGATGAGAAACGCCATCAATGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'22-21,'22-19,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.2=8.7)
C2:
PF134991=EF-hand_7=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATTCACACCGAGAGCT
R:
TCATTGATGGCGTTTCTCATCTCA
Band lengths:
136-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]