HsaEX0012370 @ hg38
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42409931-42410666:+
Coord C1 exon
chr15:42409931-42409995
Coord A exon
chr15:42410428-42410496
Coord C2 exon
chr15:42410588-42410666
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCTGACCTCCCTCCTCCAGACA
3' ss Score
9.67
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACACGGGTTCACACTGGAGTCCTGCCGTAGCATGATTGCGCTCATGGAT
Seq A exon
ACAGATGGCTCTGGAAAGCTCAACCTGCAGGAGTTCCACCACCTCTGGAACAAGATTAAGGCCTGGCAG
Seq C2 exon
AAAATTTTCAAACACTATGACACAGACCAGTCCGGCACCATCAACAGCTACGAGATGCGAAATGCAGTCAACGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'33-69,'33-67,34-69=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.001 C2=0.003
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(17.9=31.8)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACCTGAAGACACACGG
R:
CTGCGTCGTTGACTGCATTTC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development