HsaEX0012370 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42702129-42702864:+
Coord C1 exon
chr15:42702129-42702193
Coord A exon
chr15:42702626-42702694
Coord C2 exon
chr15:42702786-42702864
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCTGACCTCCCTCCTCCAGACA
3' ss Score
9.67
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACACGGGTTCACACTGGAGTCCTGCCGTAGCATGATTGCGCTCATGGAT
Seq A exon
ACAGATGGCTCTGGAAAGCTCAACCTGCAGGAGTTCCACCACCTCTGGAACAAGATTAAGGCCTGGCAG
Seq C2 exon
AAAATTTTCAAACACTATGACACAGACCAGTCCGGCACCATCAACAGCTACGAGATGCGAAATGCAGTCAACGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'34-37,'34-36,35-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038858=DUF327=PD(17.3=63.6),PF134051=EF-hand_6=PD(17.9=31.8)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0175117=Toprim=FE(17.1=100),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0175117=Toprim=FE(20.2=100),PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACCTGAAGACACACGG
R:
CTGCGTCGTTGACTGCATTTC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)