GgaEX6038017 @ galGal3
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27839125-27840912:+
Coord C1 exon
chr5:27839125-27839189
Coord A exon
chr5:27840223-27840291
Coord C2 exon
chr5:27840834-27840912
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTGAATGCTTGCATCACAGACA
3' ss Score
4.14
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATAAGGACCTAAAGACAGAAGGATTTGAACTAGAATCCTGCCGCAGCATGATCGCTTTGATGGAT
Seq A exon
ACAGACGGCTCAGGGAAGATCAACTTTGATGAGTTCCGACACCTCTGGGACAAGATCAAAAGCTGGCAG
Seq C2 exon
AAAATCTTCAAGCATTACGATGCAGACCATTCAGGAACCATTAACAGCTATGAGATGCGCAATGCAGTCAAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'22-20,'22-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGGACCTAAAGACAGAAGGATT
R:
TGCATCTTTGACTGCATTGCG
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]