MmuEX6104180 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120502529-120503211:+
Coord C1 exon
chr2:120502529-120502593
Coord A exon
chr2:120502976-120503044
Coord C2 exon
chr2:120503133-120503211
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTACATCTATCCTCTAGACA
3' ss Score
7.37
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACAAGGGTTCACGCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
Seq A exon
ACAGATGGCTCTGGAAGACTGAATCTTCAAGAGTTCCATCACCTCTGGAAAAAGATCAAGGCCTGGCAG
Seq C2 exon
AAAATCTTCAAGCACTATGACACAGACCATTCCGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'45-43,'45-37,56-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.2=8.7)
C2:
PF134991=EF-hand_7=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGACCTGAAGACACAAGG
R:
TGCATCATTGACTGCATTTCGC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types