Special

ENSG00000092529 @ hg38

Biotype
protein_coding
Gene Symbol
CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42359500-42412318:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
144
chr15:42389953-42390096
+
72.79
88.89
0
Exon Skipping
114
chr15:42408211-42408324
+
92.65
62.78
0
Exon Skipping
58
chr15:42409787-42409844
+
93.06
47.24
0
Exon Skipping
78
chr15:42409303-42409380
+
92.72
42.91
0
Intron Retention
24368
chr15:42360115-42384482
+
13.38
48.57
0
Intron Retention
1988
chr15:42399653-42401640
+
10.56
36.27
0
Intron Retention
658
chr15:42402136-42402793
+
49.11
91
0
Intron Retention
978
chr15:42408325-42409302
+
17.83
57.08
0
Intron Retention
286
chr15:42411001-42411286
+
4.4
94.22
0
Intron Retention
2148
chr15:42403778-42405925
+
23.69
62.63
0
Intron Retention
3542
chr15:42389097-42392638
+
20.38
50.72
0
Intron Retention
2267
chr15:42405944-42408210
+
29.24
84.86
0
Intron Retention
1614
chr15:42384553-42386166
+
8.3
31.43
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000079110 Capn3 1-to-1
Mouse mm9 ENSMUSG00000079110 Capn3 1-to-1
Rat rn6 ENSRNOG00000008609 Capn3 1-to-1
Cow bosTau6 ENSBTAG00000008868 CAPN3 1-to-1
Chicken galGal4 ENSGALG00000009050 CAPN3 1-to-1
Chicken galGal3 ENSGALG00000009050 CAPN3 1-to-1
Zebrafish danRer10 ENSDARG00000041864 capn3a 1-to-2
Zebrafish danRer10 ENSDARG00000043035 capn3b 1-to-2
Fruitfly dm6 FBgn0012051 CalpA 2-to-2
Fruitfly dm6 FBgn0025866 CalpB 2-to-2