HsaEX0012369 @ hg38
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42405926-42409380:+
Coord C1 exon
chr15:42405926-42405943
Coord A exon
chr15:42408211-42408324
Coord C2 exon
chr15:42409303-42409380
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCTCCTCTCTCCAGCCC
3' ss Score
10.36
5' ss Seq
CAGGTGTCT
5' ss Score
2.68
Exon sequences
Seq C1 exon
AAAAAGAAAAAAACCAAG
Seq A exon
CCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAG
Seq C2 exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'25-64,'25-53,27-64=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.762 C2=0.720
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134051=EF-hand_6=PU(28.2=42.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTTTCACCATGTTGGC
R:
GACAGAGGGTCGGGAAGGG
Band lengths:
196-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development