BtaEX0006998 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37876436-37882859:+
Coord C1 exon
chr10:37876436-37876472
Coord A exon
chr10:37881705-37881818
Coord C2 exon
chr10:37882782-37882859
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCTCTTCTCTCCAGCCC
3' ss Score
7.93
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GGAAGTTGAGAATACAATCTCTGTGGATCGGCCAGTG
Seq A exon
CCCATCATCTTTGTTTCAGACCGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAAACAGAGGAGGGAAAAGACAACACAAGCCCTGATAAGCAAGCAAAATCCCCACAG
Seq C2 exon
CTAGAGCCTGGCAACACCGACCAGGAAAGTGAGGAACAGCGGCAATTCCGGAATATTTTCAGGCAGATAGCAGGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.763 C2=0.673
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTGAGAATACAATCTCTGTGG
R:
ATCGCCTGCTATCTGCCTGAA
Band lengths:
115-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development