GgaEX0013298 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24954869-24956684:+
Coord C1 exon
chr5:24954869-24954886
Coord A exon
chr5:24955900-24956001
Coord C2 exon
chr5:24956607-24956684
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCTTCTTCTTCTAGCCT
3' ss Score
10.43
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
Exon sequences
Seq C1 exon
AAGAAGAAAAAAGGCAAG
Seq A exon
CCTATCATCTTTGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGACAACAGACGAAGATGCTGGCAAAGATGGTGAAAAAACCCACGTAGATGAGAAAAAG
Seq C2 exon
CGTTCTTCAGCAAAAGCTCGTGAGAAGAGTGAAGAGGAAACTCAGTTCAGGAATATTTTCCGACAGATTGCAGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.333 A=0.824 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]