GgaINT1008332 @ galGal4
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24954869-24956001:+
Coord C1 exon
chr5:24954869-24954886
Coord A exon
chr5:24954887-24955899
Coord C2 exon
chr5:24955900-24956001
Length
1013 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTCTTCCTTCTTCTTCTAGCCT
3' ss Score
10.43
Exon sequences
Seq C1 exon
AAGAAGAAAAAAGGCAAG
Seq A exon
GTGGGTACCTGTGCAACGTGCTGAGCATCAAAAGGCAAGATGCATGTGCAGTGCATGCAGCAGGAGTTACTTGCTACCATTAGTGATTTCTCTGCTTCTGGAAGCTGATCTAGTTAATAAAGAACACTGGACAAGAAACCATTTTCAGGCAGCGAAGACTTCGTCTTCTTATACAAAAATCTAATGAAGTACAGCGATAGCATCAGGTATTTCTCTTTCTTATGAGGGTGGCAAAAGCATAAGCCTTCCAGTTTTATGAACTTGATTCTTTAAGTTTCTCAAGTATCCTGCCTGCCTGACCCTCCACAGGCATCCTGACACCTCTCCCAGTGAGAAGCTCCCCTCCTCCGGACACACACCCTCAGTTGCCCAATGCAGCTACTCCTTCCTGCAGTTTCTGCTCACCAGAGTCCTTTTTGAGTCTATGCAATACATTTAGCAAACAAAAAAAAAAGCATACTCTGAGGTTACAAGGAAAATTATCAGCCAGAGGAAGGGTATAAAAAGGCCCACAAGGGAGAGATTTTGAAGAGGAGAGTGGCTGACTCCAATTTGCATTCCTCTTTCATACGTACCCAAAGTAGACCACAAACCTTCAGAGCAACACATAGGAGAGTGAACTCTGCTTCTTACAAGGACCTTGAAAATGTAACCAGACACTTTAATCTCAACACCGGTCAATTGCAATTATTGCTGCAGGATAACACATTCACATCTGATAGCAGCTTTCTTTGCTTCAAATACACTAAAGCAGAACAACTACATGTGTCTCCCTACAGTTGAGAACTAACACATGCCTCATGTAATTAACAAGCTCCTACACAAGCTCTGCAGATTTCTTTTTTAACATGAGGATAGTAGTAACCTAAGAAATTCCTCTGTTCTTTTTTTTTTTTTTTTAATTCCCAGATCTGGCTGCATGTGCTTTGCCACAGAATGGACATCCCCAGATACTTTTCCTAACACTATTTCCTGTGTAATTTCTACTTCTGCTCTCTTCCTTCTTCTTCTAG
Seq C2 exon
CCTATCATCTTTGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGACAACAGACGAAGATGCTGGCAAAGATGGTGAAAAAACCCACGTAGATGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]