RnoINT0029062 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112271927-112274286:+
Coord C1 exon
chr3:112271927-112271944
Coord A exon
chr3:112271945-112274172
Coord C2 exon
chr3:112274173-112274286
Length
2228 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CATTTTCCTCCCCTCCCCAGCCC
3' ss Score
9.51
Exon sequences
Seq C1 exon
AAAAAGAAAAAAAACAAG
Seq A exon
GTGGGTGTAACAGGATGAGTGGGTATTGTGCATGTGTGAGTACATGCATGCATGCATGTGTGCACATGTGTGACATGAGGTATGTGTACACACGTGTAATATGTGGCCCATGTGTACATGCACGAACATGTATATGCACATCTGTAGCACGTGGCATGCTGGGTACATATGTGGCATGTGTATACATGTGCACATGTGTGTATATGCATGTGTGTGCATGTATGTAACATGTGGCATGTGTAAGGTGCACTTCTTCCTCCTCTCCTTGGAGCCTCTGCTGAATTGGGTTCTCTTGCAGATGCTTCATCTCAACCTCACAGGACAACCACTAGGACTGTGGTTCCATTATCAGTCCTGTCTTTAGAGGGAGAAAAGGTATAGACCATCTAGTCTCCCTGAGACCATACTTAGCCAGCCCTGGAGCCGGGGGGTTCCTCAGAGTCTGTGATCTGAAATACTTCAGTCATCAGACGAGGTTTGGCGTGGATGCTGATGGCAGTCCTGTGGAATCTATCACAGAGGTTCTCCTGGCATGCATGCTGGCGCAGACCAGAGGGAACATATACCATGTGGCGCACTTGTGGTAGCAAGCCCCTATCCGCCTATATAATAGTATCTATAAGGTAGGCACCGTCTACGCTTTTTAAAAGTGAGGGTCCACATTCAGAGAAGCGAAGTGATTTGCCCACAGTTAGCACCTGGGGACATTGGAACCACAGTACCATAAATGTCTACTCCGAGAGCAGTTTCTTGTCCTTACCCTCCCAGCACTCCTTACACTTCAAGTCCTGTGTTGTCAAGACTTGCATGTAAGTCTATACATGCATGGCAGGTAGAGATGCCCCATGGCTATACCCTGCTCAGACCATCAGCTTTGTTCGTTCTGAAATCCCCACAAGCTTCATTTGCTTTGGCAAGAACTGTTGTTTAGAAGAGCAAGTTGGGGTCTGAGGAGCCGCCTGGGGCTAACTGGAGGCAGAGCTGCTTTCCCCAGCTGTCCCCCCGGGTGACCTATATGGGAAGAGCGTGGGGCCTCCCAGGGCCAGATGGCTTCTTTAGCTGAGGCTGCTAAGATTGTCTGTACTTTGGCCCCAAGCCCTACTGCTTTCCACCACACCAACACAGGAAGGGCATGGTGGTCACTCTCTAGCTCTTCTGTGGCCTCTGCATGTGCATGAGCATGACCTCATGGTAGCCCTCTTGCTTCTGTAGTTAGTACCTTCCCTTCTGGGTTTGCACAGTACGGCTTTACCTTCACTAACCCGGCTGCTACCCACAGAGACCCCATCAGAGGGACAGTCAGGTTTTACCTGACTGGCAGATGAGCATTGACTGACAATGAAGGTATCTCTTAAACGGGGGAGGAGGGCTGGCCAGAGTGGACATGCCACAAGAATCAGATTCCATGGGTCCTGAGGGGCTGGAGCCCTGTTCTCTGCTAGGACAGCTAGTAGGATTATAGTTGTGTGCCACCATGATGGGCCTGAAAGCCTCATTTTTAATGGGATTTACACTGAATTTCTGGGAGACTTCAGTGTTTTTCCATTTGAAAAGTAAATCACGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGATCCCCAGCTCCGAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGTAAATCACAAAAATATTTGAGAGTCACCGATCACATCATATGTGCTCAGCACTCTTAGCACTTTTGCATGTGTTACTTAGCACATGTGAGGAGGGTGGGTGGCATAACATAGTGGGTCCTCTAACTTTATACATTAGTTGTTTTTAAAAACATGAATAAAACTGAGAAAGAACTGAGGTTCATGCCACACATGGCAGTACACATAGGGCAAGCCTGAGCTACACAGTGGGACTCAGCCCCAAATCTCTCTCTCTCTCTCTCTCACACACACACACACACACACATACACACACACACACACACACACACACACACACAGGGGAGGCGGGTGGGAGGGAATTCCAAGGCCCAGAAAGGCGTGGCATCTCTCCCCTGGCTACCATGACTCATCAGTGCAGAAATGGATGTGAACTGAGACTCAGTTCCTAAGAAACCTTTTCCTCCTCCTCACTGGACAAAGCCGCCTCAGGGGTAGTCTGCCTTTTGTGTCTGTCAGCTTGTAATATGCTTCCTTCCTGCCCACCCCATTTTCCTCCCCTCCCCAG
Seq C2 exon
CCCATCATCTTCGTTTCAGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAACAGGGCCGGATAAACAAGGGGAAAGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]