DreINT0041200 @ danRer10
Intron Retention
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45350086-45352770:+
Coord C1 exon
chr17:45350086-45350122
Coord A exon
chr17:45350123-45352656
Coord C2 exon
chr17:45352657-45352770
Length
2534 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CAACTCTCATGTCTGATCAGCCT
3' ss Score
3.93
Exon sequences
Seq C1 exon
GGAGATAGAGAACAGGATTGAAGCTGATCATCCAGTG
Seq A exon
GTAAGTATTATCTTAAAGTGTTTGAAATCTGGGTTCAGATAGGACGTGCCCTTATTCCAAATAGTAACAAACCCCAGTTATTAAAACTGGCTGCATGTATCGAACACAGATATGCAACAGTTAATTGTGAAATAAAACCCCATTGATTGTGCTAGAGTCAATACGCAGCTGTAGTGTGTATGGTATTTTGATTCATCTAATGGTATATATCAGTTTTTGAGCAAGTACACAAGCCATTTAAATGCTTCCACTAGCCATAATCCCTGTAGACAATGCTAGAGGCTGCAGTCTTTAGCATATCTCTTATCATGGCCTAGGGGTTAAATTGGTGCCGTGACCCGGGTGAGAGTGAAGTATTGGGGGGTCACCAATTAGAAGCTGACCCTCACTACTGTAAACCTCAATCCACTGATGACAAGAGATGGGTTAGTGGCTAAATATGGCTGTGGTATTTAGTGTCCTTGGAAGTGCATTTTGCATGAGTGAGTGTAGTCATGCTAGAAAACATCCCCTGCTAATCTCAAAAGGTGCATTAATGACTTAATCTAGATCCTGTGGTCATTAGCGTTGGTGCACTCACTTCTCATACCTGAAACACTTGTTGGAGCAGGGCAAAGAGGTGGAGTGGTTACAATGATGCCATGACCCTTTATAGTGTTTAGCTGAGCAAGGGTAACGAGCTAGCTGTAAGTAAACCTTACTCCTCACCTTTCAAGTAATGAATTAGTGATGAAAAATATTTTGCGTCCTTGTTAGTGCATCCACTGCCTATGTCTGAATGATCAGTTTGAATCCTGCTCAGTTTTTGGACCCAATGAACTAGATGGTGAAAACTGGTGCCATGACCCAGATGGAAGTAAGGTATACGGGCATGTGTGTAATGGGGATCAGCTTGTATTCACTGTGGTGGAGGGTTTGCACTGATACTTGGACACAGATAGGAGTGAGATTTAGGGGGGTGAGTGTAATGGGGGGCATCTTGTAGGAACTATGTGAGTGAAATTCACTCTCCTGATCTCAAGAGGTGGATTAATGACTAAATCTAGAGGATATGGTCTTTACATCTAATGACCATAAATCTAGAGAATATTACAACACCCACCTCCCATACCAGAAACACCAGTTGCATCCCAATCAGTTTTGGGACAAGTTAAACTAGATGGTTGAAATTGGTGCCGTGACCCGGATGTAACTAATGTATAAGGGCATGAGTGGATCAGTTTATATTCACTGTGGTAAAGGGTTCACACTGTGACCTGGATTGGAGTGAGGTTTAGGGGGTAAGTGTAAAAAGGGCCATCTTGTAGGAGCTATGTGAGTAAACCTTACTCCTCACGTCTCAAGTAATGGATTAGTGAACTAGCTAATAGCTTAGTTATTTAGTGTCCTTGTTAGTGCATCCACTGCCTATACCTGGCAGTTTGAATCCTGCTTAGTTCTAGGACCAGTTAAACTAAATTGTTGAAATTGGTGCCATGACCCGGATGGAAGTGAGGTATAAGGGCATGTGTGTAATGGGAAAAACTTGTATTTGCTGTCACAGAGGAATTACACTGATCCTGGAACACAGATTGGAGTGAGATTTAGGAAGATGAGTGTAATGGAGGCCATCTTGTAGAAACTATGTGAATTCACGCTCCTGATCTCAAGAGGTGAATTAGTGGCTGAAGCTAGAGGCTGTGGTTTGTAATATCTTTATTGCAACACCCACCTTCTATGCCTGAAACACCAGTTGAATCCTGTTTCAGTTTTAGCACTGGTTAAACTAAATGGTTGAATTTGGTGCAATGACCTGGATGTAACTGAGGTATAAGGAGATGAGTGTAATGTGGATCCGTTTATATTCACTGTGGTGAAGGGTTTACAATGATACTGTGATCTGGATTGGAGTGAAGTTTAGGGGGGTGAGTGTAATAAGGGCCATCTTGTAGGAGTCATGCGAGTAAACCTTACTCCTGAGTTCTCAAGTAATGGATTGGTGAATTGGCTTGAAGCTTGGTTGTTTAGTGTCCTTGTTAGTGCGTCCACTGCCTATGCCTGAAACAACAGTTTGAATTCTGCCCAGTTCTGGGACCAATTTAATTAAATGGTTGAAATTGATGCCATGACCTGGTTGAAAGTGAGGTATAAAGGGATGAGTACTGGGAATCAGCATGTATTTTTTATGTTTAAGGAGTTACACTGATACTAGGACACAGATTGGAGTGGAATTTAAGGGTATGAGTGTAATGGAGGCCAACTTGTAGGAGAGAAGTAAACTTCACTCTCCTTACCTCTAGAGGTGGATTAGTGACTAAATCTAAGTGTTGTGGTCTTGATTGTCCTAATCAGTGCACTGAGCTCCTATGCCTACAACACTAGTTTCCACAGTGCGAGAAGAACTAAAAAGATTTAACTGGTGCTGTGACCCAGATAAAATCTGTTGACAAATCTGTTGGCACTTTTCTTCAGAGAAGATCATTTGTACTAGTTTTTCTCCATATTTGTCAAAATTGTTCTAATACACGCAACTTACAACTCTCATGTCTGATCAG
Seq C2 exon
CCTTCTCCGGCTTCAACTGGGGAGGAGAGCGAAGAGGACCAACAGTTCCTGTCCATTTTCCAGCACATCGCGGGGGACGTGAGTACTGGGGAGGCAGTGAGCGCTTGGGGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864:ENSDART00000148667:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]