GgaINT1008331 @ galGal4
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24953791-24954886:+
Coord C1 exon
chr5:24953791-24953827
Coord A exon
chr5:24953828-24954868
Coord C2 exon
chr5:24954869-24954886
Length
1041 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTTTGTTTCTGTTTGTACAGAAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
GGAGGTTGAAAACATGATTGAGGCAGATCGCCCATCG
Seq A exon
GTGAGTACCATCCTGTCCTCTTCTGTGTGGGAACAGAAGGGAGGAGTGTCACATTTAGGGAAACCCATAGCAGGAAACTATTTGCAGCCACATGACAGCTCCTTTAACAAATTCCCACATATTCTGATCAAGATATTCCTATTAACACTTGACTTGGTATATGCTGCTTTCTGATTTGGACAGACCAGAATCTTTTGCCAGGTTTGAGATTTGTTCTTGGCATAAAGAACCTCACGCGAAGCATTGCCTTTGCTTCCAGCAGTTGAGAATGTTCATGCTCCGGTGGAGGCCTAGCCATCCTTTGGGATGTTTTTTGTTTGTGTGTCTGGCAACTCATCTAATCAAGAAAAAGAGTGCCTTATTTTGAAGTATGAGCTTTCTGAAAAGGGATTCTATTAGTATTGTGATTCAAACTAGCATCCATGACAAACGAACTCTTCAGCCTGGGGTTTTACACATCTGTATGGGAATAAATTGGGGCATACAACACACTCAGTCTTGAAAAAAAAACAGAATGCTCTTGCATGGAACTGAGCTCCATCTTGTTCAGAAGCCTTCCCCTTCCATTTGCTGTCATAATACCAAAATTTCTGCCTAGATCTGATGGAATTGAATTGCCACTCCAAAAAGCATGAATATGTGGGCACAGAGGTCCAATCTACACTGCACTGATTTGTTGGGAAAAATAAAAGGAGTAATTAGGGTTAATGTATTTGATTCAAGTAGATAAAGCCCAAGAGGTGATGGCCTGTTGAAATTGCAGAAGCCATATCAAAACAGCAGTCCGTTTCTTTGTGGCTGCATTTTCCCCTCTTTTTTTTTTTTCTTTTCTCTCTCTTTTTTTTTTTAATTTATTTTTGAGATTTGAAATCAATGTGAATATATAAAATTGAAGGAAAAAGTACGACTATAGGAATGGGAAACACAAATATGAGAAAGTGAAAGAAAAAAGGAAACATTGCTATTTAATAATGTGATCTGGTACAATCCATAATTCTTTTTAAAAACACTTCTTTTCCTACTTTGTTTCTGTTTGTACAG
Seq C2 exon
AAGAAGAAAAAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]