HsaINT0027480 @ hg38
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42403741-42405943:+
Coord C1 exon
chr15:42403741-42403777
Coord A exon
chr15:42403778-42405925
Coord C2 exon
chr15:42405926-42405943
Length
2148 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTTTCCTTTTCTTATGCAGAAA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GGAAGTTGAAAATACCATCTCCGTGGATCGGCCAGTG
Seq A exon
GTGAGTGGTTTAGATCTTCTGTGCGAAAAGTCCAGAGGGTCCCCTTCCCTGACCATGCAGGGGACAGATGGTGCAGGGGAGAATGGGCACTGGCAGAGGGAATGGGAGTCTGGGCTGTGCTGAGCAGTCCCTCCTTGGCACTGCAAATCCTACTTTGGCATGGCCAGAAGTAATCGGCCTTAAGCACCGGGGGCCATTGAGGCAGTTCAGGGGCTGGGAAATATGGAAGAGGGTCCTGGAAAGGAGAAGCAATTTGAACAATCGGAGGGAACAAGGCCACAGGAAGGGATGACAAGAGCCGCAGCGAACACTGGATTCTGAGACTGGATAACATTGGATTTCACACATAGAGAAAAGAAAGTAAGCTGGTGCCGGACCTGGTGTTGACACTTGGATCCTCCACTTACCAGCGGGGTGACCTGGACAATTTCTGTAATCCCTCTCACTCAGTTTCCTACTCAGTAAAACGGGGATGATAATGTGCCTTGCAAGGCTTTTGTGAGGCTTCATCAATGAGGTGATGTATGTGAAGTGTCTGGCACAGCATGGGCACTCAAACAGAGGTGCTTTTTCACACTTTACACCTTACAAGGTACTTTTCACATGTGTCATCGCGATACTTGCAAGGTTGCTGAGAGGTAGATGGGGTTATAATCCCTGGTGTTCAAGAAAGGAAGCAGAGGCTCAATGGGGTTGAATGACTTCTCTGAGTTCACAGAGCTCAGTAAGTGGCAGGGTTGGAACTCACATTCAGACTCTCTGACTCCAGACTTAGGTTTTTCCGCACCTCCACGCTGAGGCCAGCCCCAGGCAGTGAGAAGCCCAAAGTCCGAAGCACAGAGTGCTGTGTGTTGGGCTCTGTGTGTTGAGGAGTCTTGTGACTGCCTTGGGGCTTTGGGCTGTAGTCAGCTGACAGTCCTTTGTGCTCTGTGGGGATGACGTAGGCCAATGGGAGGACAAATGCCCCTCTGAACTGTCTTCTGGGCAGTGACAGTCATGGTCATAATCCTGACCCTGAGCCAGTGCCAGGTCTCCAAGTGCCTTCTGAATGACCACAGGCGATTGGTTTTAGTGGTAGGTGTGTGGGGATCTGTTCTGGTCATCTGGATGCTGGTCATCGGTGTGCAGTATTGATCAGGACCTGCAAACCCAAAAGCTTATGGGAGCTGGCACGTCACGTGAGTAGAGCAGGCAGGTGCAGGGGTTTTGATGTCCCTGCACTGACACAGTTGTCTGCAGTTCTCAATTGACATTTCGCTCCAGTGTCGAGGGTCAACAGGAATGTTGGGGCGTGGGGCAATCTGGAAGACACAGGGAGCAGGGCCCTTGGCTCAGCTGATAGTTGCCGCAGGGATTACAGGCCCAGGGCAGCCTGCCACAGCTGGGGCTTTTACCAAAGAAAATCTCCCTATGTTAAATGCTTGCTCAAAAATTTTTAAAAAATATTCTGTAAGTCAAAATCCATTGTTAGGTCAGTTTGAGAGAGCCATGTTTTTGGTGTTTTAGTAACCAATTTCATTTTTTTATTATTTATTTATTTGTTTATTTTTGAGACGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGTGCCCACCATCACGCCTGGATAATTTTTGTATTTTTTAGTCGAGATGGGGTTTCACCATGTTGGCCAGGATAGTCCTGAACTACTGACCTCAGATAATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAGCACGCCCGGCCACCAATTTCATTTTTTAAAAAAGGAAGAAAGAAAACCTTAGCCAGAAGATCTTTTTCCTTGCCATATGCAGTAAGAGTAGATTATAAAAACAAAGTCAGAGCAGTCACTGGTGTCTGGGCATGGAGGAGAAAGAAGAATTCTCTTCTCCCTTCACCCTCCATGCCCCTTTTTGGCTCCATGTGATTCAGATTTCTGGACCCTGGAGCCCCACCCCAAGCTAAAGACCAGGATACAGGGAAGCCAAAAGCCACTGGCGGTTCTGAGAACTTACTTTTCACTTATTCTGCATTTACTGTTTCCTTTTCTTATGCAG
Seq C2 exon
AAAAAGAAAAAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529:ENST00000318023:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains