GgaINT0054926 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27837218-27838002:+
Coord C1 exon
chr5:27837218-27837319
Coord A exon
chr5:27837320-27837924
Coord C2 exon
chr5:27837925-27838002
Length
605 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
CTTCACTTGTACCTTTCCAGCGT
3' ss Score
7.7
Exon sequences
Seq C1 exon
CCTATCATCTTTGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGACAACAGACGAAGATGCTGGCAAAGATGGTGAAAAAACCCACGTAGATGAGAAAAAG
Seq A exon
GTTCTGCAGTAACTGGCGAGGCAGGGGATAGAGCTTGGTCTGGCCAGCATGAAAGGGCAGCTGGAGAGAGCACAGGAATGGGACAGAGCAGTGTCCTTACATACTTAGCAGTTTCAGAATTGAGGCTTGCTCTCTGCATGTGTCTGAGAAAGATGGAAATGATAACAGTGCAGCTATCTAATGTGGTATTAGTCTCCAGAACAGGGCCTCCCACACTGCAAAAATCTCTGAAGGCACCAAGCTCCTCCAAACAATTTCATAGGCTACAGGGTAGCTATGGGGCATGTTCTCCTCTTCTGATCCAAATTTCTCCTTTGCAATGTTTTGAAATGAAAAAGAAAAGAAAATCAGAATGTAAAGATCCATTCGTGAATGTAATCATTTAGATTGGTTTCAAGAATGATGAGAGCAATGAGGGGATAGTAACGATGCAGCGGGTTCATCAAGGAGTGCATTTAATGAAAGAAAGGGGAAAAGTCCATGAGGATAACTTGTTCCTCTGGAGAGTTCCACTATCACTAAGAGGCTTATCTGTGTGAAGGGGGTGAGCCACCCAGATCCCTTCATTTTCCTGGATCATATATTCTTCACTTGTACCTTTCCAG
Seq C2 exon
CGTTCTTCAGCAAAAGCTCGTGAGAAGAGTGAAGAGGAAACTCAGTTCAGGAATATTTTCCGACAGATTGCAGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]