HsaINT0027480 @ hg19
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42695939-42701578:+
Coord C1 exon
chr15:42695939-42695975
Coord A exon
chr15:42695976-42701500
Coord C2 exon
chr15:42701501-42701578
Length
5525 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTCCTTTGTGCCTCCACAGCCA
3' ss Score
10.4
Exon sequences
Seq C1 exon
GGAAGTTGAAAATACCATCTCCGTGGATCGGCCAGTG
Seq A exon
GTGAGTGGTTTAGATCTTCTGTGCGAAAAGTCCAGAGGGTCCCCTTCCCTGACCATGCAGGGGACAGATGGTGCAGGGGAGAATGGGCACTGGCAGAGGGAATGGGAGTCTGGGCTGTGCTGAGCAGTCCCTCCTTGGCACTGCAAATCCTACTTTGGCATGGCCAGAAGTAATCGGCCTTAAGCACCGGGGGCCATTGAGGCAGTTCAGGGGCTGGGAAATATGGAAGAGGGTCCTGGAAAGGAGAAGCAATTTGAACAATCGGAGGGAACAAGGCCACAGGAAGGGATGACAAGAGCCGCAGCGAACACTGGATTCTGAGACTGGATAACATTGGATTTCACACATAGAGAAAAGAAAGTAAGCTGGTGCCGGACCTGGTGTTGACACTTGGATCCTCCACTTACCAGCGGGGTGACCTGGACAATTTCTGTAATCCCTCTCACTCAGTTTCCTACTCAGTAAAACGGGGATGATAATGTGCCTTGCAAGGCTTTTGTGAGGCTTCATCAATGAGGTGATGTATGTGAAGTGTCTGGCACAGCATGGGCACTCAAACAGAGGTGCTTTTTCACACTTTACACCTTACAAGGTACTTTTCACATGTGTCATCGCGATACTTGCAAGGTTGCTGAGAGGTAGATGGGGTTATAATCCCTGGTGTTCAAGAAAGGAAGCAGAGGCTCAATGGGGTTGAATGACTTCTCTGAGTTCACAGAGCTCAGTAAGTGGCAGGGTTGGAACTCACATTCAGACTCTCTGACTCCAGACTTAGGTTTTTCCGCACCTCCACGCTGAGGCCAGCCCCAGGCAGTGAGAAGCCCAAAGTCCGAAGCACAGAGTGCTGTGTGTTGGGCTCTGTGTGTTGAGGAGTCTTGTGACTGCCTTGGGGCTTTGGGCTGTAGTCAGCTGACAGTCCTTTGTGCTCTGTGGGGATGACGTAGGCCAATGGGAGGACAAATGCCCCTCTGAACTGTCTTCTGGGCAGTGACAGTCATGGTCATAATCCTGACCCTGAGCCAGTGCCAGGTCTCCAAGTGCCTTCTGAATGACCACAGGCGATTGGTTTTAGTGGTAGGTGTGTGGGGATCTGTTCTGGTCATCTGGATGCTGGTCATCGGTGTGCAGTATTGATCAGGACCTGCAAACCCAAAAGCTTATGGGAGCTGGCACGTCACGTGAGTAGAGCAGGCAGGTGCAGGGGTTTTGATGTCCCTGCACTGACACAGTTGTCTGCAGTTCTCAATTGACATTTCGCTCCAGTGTCGAGGGTCAACAGGAATGTTGGGGCGTGGGGCAATCTGGAAGACACAGGGAGCAGGGCCCTTGGCTCAGCTGATAGTTGCCGCAGGGATTACAGGCCCAGGGCAGCCTGCCACAGCTGGGGCTTTTACCAAAGAAAATCTCCCTATGTTAAATGCTTGCTCAAAAATTTTTAAAAAATATTCTGTAAGTCAAAATCCATTGTTAGGTCAGTTTGAGAGAGCCATGTTTTTGGTGTTTTAGTAACCAATTTCATTTTTTTATTATTTATTTATTTGTTTATTTTTGAGACGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGTGCCCACCATCACGCCTGGATAATTTTTGTATTTTTTAGTCGAGATGGGGTTTCACCATGTTGGCCAGGATAGTCCTGAACTACTGACCTCAGATAATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAGCACGCCCGGCCACCAATTTCATTTTTTAAAAAAGGAAGAAAGAAAACCTTAGCCAGAAGATCTTTTTCCTTGCCATATGCAGTAAGAGTAGATTATAAAAACAAAGTCAGAGCAGTCACTGGTGTCTGGGCATGGAGGAGAAAGAAGAATTCTCTTCTCCCTTCACCCTCCATGCCCCTTTTTGGCTCCATGTGATTCAGATTTCTGGACCCTGGAGCCCCACCCCAAGCTAAAGACCAGGATACAGGGAAGCCAAAAGCCACTGGCGGTTCTGAGAACTTACTTTTCACTTATTCTGCATTTACTGTTTCCTTTTCTTATGCAGAAAAAGAAAAAAACCAAGGTAGGTGTGTGGGTAGAGAGCATGAAGTGTGTGTACTCATGCATATGTATGTGCATGCATGTGAAGTGTGCATGTGTGAGCTCATATGCATCCATGCACCAGACTTGCCTCTTCCTCCCCCTCCTTCCTGAGCTTCTGCTGGGGCCGAGCGTGCAGTAATGACAACTACGATTTGCTGGGGGAAGGCTACGTGCCAAGCACTCTTTTAGGTGCTTTCCATGATTAATTCCTTCCTCACAACAGCCCTATGAGATTAGTACTATAACTATCCCCATTTTCAGAGGGAGAAAAGGTACAGACTTGACTAACTTGCCCAAGGCCACACAGCCAGAGAGGGGCAGAGCCAGTACTTAGAGCCAGGCAGTCTGGGTCCAGAGTCCGTGTCCTGAACCACAAGAGGCCATCATACACCATCAGATTTGGTGCTAGCATTTCTGGTGGTGCCTGGTGGTGATGGATCCATCACAGGGGTCCTCCAGGTACTGGTGCTGGCCCAGACCAGAGCTGACACTCCTCAGGCACTACCACATTCCAGGCACTGTGCTTGGGGTCAGTCCCTCTCTTTTTTTTCCCCCCCAATTATAACAGTATCTACAAAGTAGGTGCTGTTATTTTTCCCCTTTCACAGGTGAGATAGACTCAAAGAAGTGAACTTGCCCAAGGAACAGAACTAATGAGTGGGGAAAATGGAACTGGAAACCATGTCTGTTTACTCCAAAACCTGTGTTTCTTGCCCTCTTTCTCTGATGCCAGCCCCCTACACTTCAAGGCCTGTGTTGTCCAGACCCACACTCGGGCCTGCCAGTGTGTGCCTGGCAGGGATGCTCCATGGCCACACCATATCCATCCTACACATCCCCCCTCAGACTGTGACCTCCATTTGCTCTGGGATCCCCACAAGCTTCAGCTGCTTGAGCAAGACACTGCTTAGAAGGCAGAGCAAGCCAAGGCCTCTGGGGCCTGCTGGGAGCCAAAGCTGGGGAGCCGTTTCCACGGGTCTATCTGCTTGAGCTGTCCTAGATGAGCAGCATGGAAGGGCAGTGGTGCATGAGTCCAGGCGGGCTGCTTTTCTGCTCCGAGAGGCTCTGCCTGCCCAGTTGTTCTCTGCATTGCAGCCTCAATCCCCACAGCCTTGCCTTCCCCCGGCTTTCCCTACAGGTGCACCGCATCCACAGTGTTGGCACCATGCAGCAGCCGCTCTCCGTCCTTTTCATATCCTTGTCACTTGCACGAGCATGTCTTGAAAATATCCCTTGTTTGTGTAGCATCTTAAATGTTTTTGCAGTATGATTTTGCATTCAGTATCTCATTTGATCCCCACAAGAGCCCTATGAGGAGGGAAAGCAGATTTTACCATTAAAGGATGAGTAAACTGAGGCCAGAGAGGATATTTTTGGTTTTTTTTGAGACAGTCTCACTCTGTCACCCAGCCTGGAGTGCAGTGGCTTGATCTTGGCTCACTGCAAGCTCCACCTCCCATGTTCACACCATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACACCCAGCTAATTTTTTTGTATCTTTAGTAGAGATGGGGTTTCACCCAGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCTGCCTGCTTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAGAGAGGATATTTCTTATATGAGGGGCAGGGCTGGGATTCCAGCCCAGTGTTCTGATGGCTCACCCACTGACCATGCCACTAATCCGTGTCCTTTTTCAATCTATACTTTGCAGGGTTGTAGAGGTTCCTTTGAGGTGCCTCAGTAGCTGCCATGGTGATGTGGGGTGCTGAGGGCAAAGAGCTCTGTTCTCATTAATCAGAGAAGCTTGTGTTTTTATATACACCATGTTTCTGCAGGAAATTTAATTTGAACAGTGTTTCCATCTGGAAAAAAAAAAGTCTACAAAATACTTGACAATCACTGCACTAGATCATGCTGCTTTTAGCATTCTTAGCATTTCACGTGCTGAGCTCTCAATACTCTACCATGAGGAGGGATGGAGTGGGTATGAAAAGATAAAGAACTGAAGTCACACGGCTTGTCAGTGGCAGAGATAGAGCTTGAACCGAGGTTGAAGAGCTCCCGCCTATTCCTTTCCTCTTCTCACTGGATAAAGCTGCTCCAAGAGAGGTGCTGCCTCAGTGTGCCTGTTCAGACTGTAATCCTCCCTTCCTTCCTGCCTCCTCCCTCCTCTCTCCAGCCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAGGTGTCTGGGCATGTGGCATGGGTGGGGTGGCCAGCACGCTACAGGGGCTTCCTATGCGCTTGGGATACACAGGGGCTGGAGGCTTCCCAGGAGTTTGTCTTGAACATCTGGAGGTTTGAATTTGTCCCACTGACCTTTTCTTTCAGCAAGTTCCCCTGAAATTTGGGCTGCTGCTTGGGTGAATATCCCAGGATGGGGGTTCCATTCTAGGAGTGGACTGGCAGGCTGAGCCTCCCATGGAGCTGATCCAGCCAGGATACAGAGAAGGGGAGGCAAAGGCTGAGACAGAACCAGCTTGAGAGCGGAGGCGCAACTCTTGTCTCCTGGTGGCCTTGAGCATTTCACAATAGGGGGATAAAGGATAGGAGCAGAAAAGTGGGGCTGACTTCAGAAATGGGGTCCTCTAGAGCTCACGGGAGGGTGTTAGATTGGAGTGGGAGCTTAGTGGAGGTGAGCCTTAGAGGCAAAAGTCTCCAGACCAATCCAGGGCCCCTCTTCTATCCGGGGGCCCCTCTTCTATCCAGGGCCCCTCTTCTGTCTGGGAGCCCCTCTTCTATCTGGGGCCTCATGCAGTGGGGCCTAGGGGAGGTTCTCTGAGGACTTGGCCTTGATGACAGGGTGGCTGGAGGAATCAGAACGGTCAGACCTTCTTTGACCTGCGGGCACCTTTAGTTGGAATGGTCAGGCCTGGGATGGTGGAGGGGGCTCTTGCAGGTGGGGACTGGGGTGGCGGGGAGGAGGCTGTATGGCCGCCATATCTCCTTTGGCTGGGGGCGTCAGGGCTGGAGAGGTGTGAAGAGTCCCTGAGGCCTCGATGCATCTCACTCCAGCTCACCAGGTCTGCATTTGCCCGTCCCCAGCTCCTGCTGCCACCTCCGGCCGTTTTAGGCACTTGGCTCCCTTGGCCCAGAGGAGCTTGCCTCACAGGCCTGTGCACCTCTGACCCCTGTGAACCAGTTTTCCTTTGTGCCTCCACAG
Seq C2 exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-CAPN3:NM_173087:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.721
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0),PF156271=CEP76-C2=FE(12.0=100)
A:
NA
C2:
PF038858=DUF327=FE(30.9=100),PF134051=EF-hand_6=PU(28.2=42.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)