MmuINT0028751 @ mm9
Intron Retention
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120322714-120327916:+
Coord C1 exon
chr2:120322714-120322750
Coord A exon
chr2:120322751-120327838
Coord C2 exon
chr2:120327839-120327916
Length
5088 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTCCTTTGTGTCCCTATAGCCA
3' ss Score
10.74
Exon sequences
Seq C1 exon
GGAAGCTGAAAATACAATCTCTGTGGATCGGCCAGTG
Seq A exon
GTAAGTGGTTAGGCTCTTAACTATGAGAAGATATGGGGGTCACATTCCAGCCCAGGCAGGGGCAGTCAAGTGTGCATGGCAGAAGGAATGATGCTTCTGTTATAGAACCATTTTGCTGGTCAGAAGCAGGAGTGTGGAAGAGGAGAAAATATTTTATCAATTAGAGGAAGGCAGCTGGGTTTAGGAAGTGATGGCAAGGAAGGCTAATATTGGCTTAAGAGGTTGGATCGCATCTGATTTCTCACACAGAGAAAAGGGACTAGGTTCAGGACCCAGGGTCAGAACCTGGGTCATTCACCTTCCACCTTGGTGACTTGGTCAAGTTTACAGAACCCCTCTGACTCAGCTTTCTACTCTGTAAAATGGGGATAATCATAATCCCCTGGCCATGCTGGTGGAGTTTAGATCTATAAGCTCACACATGTGAAATGTCAGGTGTAGCATGTGCATCACAAGGGTATTTCTAGATATCCTTCATGACTGTGGCTTACATCATTTCTTCAAACATTTGGAGAAGAGGACGAGATGGATAAGGTTGTCATCCCAGCTTTTCACTCGAGAAGGTGGTGGCTCAGTGGGGTTAAATGGCTTCCTTGCACTCCTGGAGGCAGGAAGTGGCAGGTAGGGCAGCGGAGAAGTTTAGAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGAGTGTATCAGGAGAGAGGGGTCGGTGTAATGGAGGAGACTCAGGTCTGCCATGGACCTTGTGGCTGTTCTCAGAGTGACTTGACCCAGGACAAACGCCCCACTGAGTGTCTTTCAGGTAGTGACTCCATGATCACAATGCTGGTTCCATGCTAGGGCTGGAGCCAGGTACCTTCCTAACAACTGCACATCTTATTTTAGGGTTGGGTGTGTCTTGCTCTTCCTCATCCTTTGGGTGCTGGAACAGCATAGAATATGTTTCAAGAGTTGCTCACTCAAAGATTTCATGGACTGGGAGCGTGGCTGAGTGTAGAATGCTTGCCTGGTATTCACAGGGCTCTGGATTCAATTCTAGTGCTGCTTAAGAGGGAGGAGGGAGGCTCATGGGAACAGGCATGTCATGAGTACTGCAGGTCAGTGGAGGGGGTCTAGTGTCCTTACATACCTATGTTTGTCAACAGCTTTCAAATAATACATGGTGGGCCAGGTGTGGTGGCACAAGTGAATCTCTGTGGTTTCAAGGCCTACAGAGAGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGGTTTTTTGTTTGCTTGTTTTGGGGGATTTTTTTGTATTTTGTTGTTGTTTTTAAAGACACTGGGTAGGGGCTCAGCTGACTTGCCACAGGACATTGCTCGCCCAGTGTAATTGCCAAACCTTCCGATTTTACAAAAAAAGCCCTAACCTGGAAACACATATGAATCTCCCTGTTACATGTTTGCCTAAATATTAAAACAAAATCTCCTTAAAAAAAAAAAAACTTCACTTTCACACAGGTTTGAATGAGCCACATTTTGGCGACCAATTCTATTTTTAAGGACTGGCAAGGTCCTTTCCCTCCTCAGCATCGGATTAGCAGAACAAAGCGTAGCAGCTGTCAGTCTTGGGATGTGGCAGAAGAATACTCTTCCTCCTTTGCACTCTGTGTTCTTTAAAAAATTGTATTTTATTAATTTATTCATTCATTCGTGTATGTGCATGTCCCAAGCACATATGTGGGGGTCAGAGGACAACTTGTGGCAGTCAGTTCTCTTGTTTTGCTTTGTGGTTCCCAGGGGTCATTTGGGTTGTCAGTCTTGGTGGCAAGTGCCTTTACCCCTGAGCTCCAATTGATTACAATATCTGGACTCTAGAGTCTTGAGCCACTGGCCACCCTAGAAACTTGATTTTCACCCATTCCTCATTTACTGTCCCCTTTCTATGCAGAAAAAGAAAAAAAACAAGGTGAGTGGGCCAGGCACTGTGCTTATGTGTGCACATGCATGCATGTGTGTGTACACATATGTAACATGTGGCACGTGTATGTATACTTGTGTATATGCATGCATATGCATACACATGTGTAACATGTGGCACGTGTGTGTATACTCATGCATATGTATACACACACGTAACATGTGGCATGTGTGTATACTTGTGTATATGCATGCATATGTATACACATGTGTAACATGTGGCATGTGTGTATATACTCATGCATATGTATACATGCGTGTAACATGTGGCATGTGTGTATACTTGTGTATATGCATGCATATGTATACACATGTGTAACATATGGCATGTGTGTGTACACTGTGGCATGTGTAAGATGCACTTCTTCCTCTTTTCCTTGGAGCCTCTGCTGAGTTGGGTGCCCTCGCAAGTGCTTCAGCTCAGCCTCACAGTGATCCTGGACTGTGGTTCCATTATCAGTCCTGTGTTTAGAGGGGGAAAAGGCAGAGACAAACCAGTCTCCCTGAGACCACACTTAGCCAGGGGGTTCCACAGAGTCTGTGCTCTGAAATACACAGCCGTCAGACAAGGTTTGGTGTGGGTGCTTATGGTGGTCCTGAGGAATCTATCTCAGAGGTTCTCCTGGCACGAGTGCTGGTCCAGCCCAGAGGGAACATATACCATGTGAAGTGCTTATAGCAAGCCCCTACCCCACTATATAATAGTATCTATAAGGTAGTCACTGTTTATGCTTTTTATAAGTGAGCGTTCACATTCAGAGAAGCAAAGTGATTTGCCACACAGTTAGCAACTGGGGACATTGGAACCACAGTCCCACATATGTCTACTCCGAGACCAGTCTCCTGCCTCACCTCCCCAGTGCTCCCTACCCTTCAAGGCTTGTGTTGTCAAGATTGCATGTGAGTCTATAAGCGCATGGCTGGTAGAGATGCCCCATGGCTACACCCTGCCCACTAGTCTGCTCAGACCGTCACCTTCGCTTGTTCTGAGATCCCAACTAGTTTCATTTGCTTTGGCAAGAGCCGTTGTTTATAAAAGCAAGCTGCGGTCTAAGGAGCCTCTCAGAGCTAAACCCGACTCTCTCTGGTGCTCCCCCTGGGTGAGCTGCACAGGAACAGAGTGGGGCCTCCCTGACCAGGCTGCTTTTTTTAGTGGAGGCTGCTAAGATTATCTGCACTTTGGCCCAAGCCCTGCTGTTTCCCACCACACCAGCACAGGCAGGATGTGGTGGCCACTCTCTAGCTCTTCTGTGGCCTCTGCACTTGCATGAATATGGCCTTAAGGTAGCCCTCCTGCTTCTGCAGTACCTTCGGGGTTTGCACAGTAAGTACAGTTTCACTAACCCTCTGGCTTCCGCAGAGGCCCTATCAGAAGGGAAAGTGAGGTTTTACCAGGTGCAGTAGCAGATGAGTGTGAACAGCCACTGAAGGTAGTTCTTACATGAGGGGAGGAGGGCTGGGCAGAGCAGACATGCCACAAGCAGCAGGATATGAGAGGTTCCTGGGGAACTGCAGGGCCAGAGCTCTGTTTTCTACTAGGATGACCTTGAATTTGTGGTCATTCCCTCTGCTAGGGTTACAGTTGTGTGCCACCACGACCAGCCTGAAAGCCTCATTTTTAATGGGTTTGACACTGAATTTCTGGGAGACTTCAGTGTTTTTCCACTTGAAAAATAAATTCACAAAAGTACTTGATAATCACCGATCACATCATCTGTGCTCAGCATTCTTAGCGCTTTTGCGTGTTACTTAGGAACGCACAAGGAGAAATGGGAGGTGGGATACAATAGCGGACCATCCAACTTATAGAACATATTAGCTGTTTTTAAAAATATGAATAAAACTGAGAAGAACTGAGGTTCAAGCCACACATGATGGTATACACAGGGGCTAGACTGAGCTATAGTGGGATTCAGTCCCAAACAAAACAAAACACAGAGAGGGAGGGAGGGAGGGACAGACAGACAGACAGACAGAGACAGAAATGGAGAGAGACAGACAGAGACAGAGAGAGTACTCTTCAAGGTCCAGAAAGGTTTGGCATGTCTCCTAGCCACACGGCTTGTGAGTTCAGAAATGGGACTCAGGCTTCTGAGTGACCATTTCCTCCTGAGTGGACAAAGCTGCTTCAGGGGTCGTCTGCCTCTTGTGTCCGTCGGCCTGTAATACTTGCTTCCCTCCTGCCCGCCCCTTTCCCTCCCCTCCCCTCCCCAGCCCATCATCTTCGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAGCAGGGCCCGAGAAACGAGGGGAAACCCCACAGGTTTCTGAGCATGCGGCATGGATGGGGAGTTTAGCTCGTAGTGGCGGCTCTGCTATGCTCTTGGGGTCCTTAGGGGTTATGGTAGCTCTCAGGGGAGGGTCTCTTCAGCACTGTGGGGTTTGGAATTGTCTGCTGACTTTTCCTCCCGGCAAGTTCCTCTGAACTTTGCAGGTATTTCTTGGGTAAGTGTCTTTTAAGGTCGCTGCCACACCAAACCAGTCCCAGGGTGGGAAGGATAGGCCAAGAACAGCCCACTGACGCCTCTCCAGTCAGGACAATGGAGCATGGGGAGACAAAGGCTGAGTGAGGCGAGCCAGCTGCAGAGAACGAAGCTGAACTGTCTTTGAGTTGTTGCAAAGGGAGGAAAAGGGGATGGTAGCAGAAAGTGGGGTCTGACAGCAGCCCTGAAGTCCTGCAGAACTCCAGGGCCACGCCCTCCATCCCAGAGAACCTACCAGGTGGGGAGGGAGGGGTCCTTTGAGGACTTAGCTACAGAGACAGTAGCGGTTGGAGGACCTGGCCTCTGGTCAGGCTCAAAAGAGCAGAGAAAGTTCTATCTGGAAGAGAGTCGGGAGAGTCAAGGATGCTGTCTGCATGTTAGCATGGCAAATTTGTCCTTTGGCCTGAGGTTCCGGGACTGCAGAGCCTCTAGAATCCTCACTGAGTTTGCAGGTAGACTGAAAACTTGAACCTTGTGCCACCTGCTGCTGCTTTATGGGGCTGTTTGGGATACTGACGCCTGGGTTCCCATAAACCAGTTTCCTTTGTGTCCCTATAG
Seq C2 exon
CCAAGGCCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-Capn3:NM_001109761:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.731
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: