RnoEX0016709 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112271927-112275147:+
Coord C1 exon
chr3:112271927-112271944
Coord A exon
chr3:112274173-112274286
Coord C2 exon
chr3:112275070-112275147
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATTTTCCTCCCCTCCCCAGCCC
3' ss Score
9.51
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
AAAAAGAAAAAAAACAAG
Seq A exon
CCCATCATCTTCGTTTCAGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAACAGGGCCGGATAAACAAGGGGAAAGCCCACAG
Seq C2 exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'20-22,'20-20,22-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.789 C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]