BtaEX0006997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37876436-37882859:+
Coord C1 exon
chr10:37876436-37876472
Coord A exon
chr10:37878425-37878442
Coord C2 exon
chr10:37882782-37882859
Length
18 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTTTCTTGTACAGAAA
3' ss Score
8.94
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAAGTTGAGAATACAATCTCTGTGGATCGGCCAGTG
Seq A exon
AAAAAGAAAAAAAACAAG
Seq C2 exon
CTAGAGCCTGGCAACACCGACCAGGAAAGTGAGGAACAGCGGCAATTCCGGAATATTTTCAGGCAGATAGCAGGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.000 C2=0.673
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCTCTGTGGATCGGCCA
R:
ATCGCCTGCTATCTGCCTGAA
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development