HsaEX0012368 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42695939-42700522:+
Coord C1 exon
chr15:42695939-42695975
Coord A exon
chr15:42698124-42698141
Coord C2 exon
chr15:42700409-42700522
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTTTTCTTATGCAGAAA
3' ss Score
10.2
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGAAGTTGAAAATACCATCTCCGTGGATCGGCCAGTG
Seq A exon
AAAAAGAAAAAAACCAAG
Seq C2 exon
CCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'27-32,'27-31,30-32
Average complexity
C1
Mappability confidence:
90%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.707
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0),PF156271=CEP76-C2=FE(12.0=100)
A:
NO
C2:
PF156271=CEP76-C2=PD(19.0=50.0)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATACCATCTCCGTGGATCG
R:
TTGTTTTGCCTTTGCCCTCCT
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)