DreEX0018828 @ danRer10
Exon Skipping
Gene
ENSDARG00000043035 | capn3b
Description
calpain 3b [Source:ZFIN;Acc:ZDB-GENE-041001-149]
Coordinates
chr20:26085307-26088483:-
Coord C1 exon
chr20:26088450-26088483
Coord A exon
chr20:26088219-26088248
Coord C2 exon
chr20:26085307-26085375
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTTTTTATACCAGCAG
3' ss Score
5.48
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGTTATAGATGCAGAGATTGAAGCGGAGCCCATG
Seq A exon
CAGGTAGATAACGTCAAGAAAAAAATCAAG
Seq C2 exon
CCATTTGAGGAAGAGGAGACTGAAGAGGAAAAACAGTTCAGGGCCATCTTTCAGCAGATAGCTGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043035-'11-13,'11-11,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.500 C2=0.130
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATAGATGCAGAGATTGAAGCGG
R:
GCTATCTGCTGAAAGATGGCCC
Band lengths:
96-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]