MmuEX0009071 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120496978-120501324:+
Coord C1 exon
chr2:120496978-120497014
Coord A exon
chr2:120498968-120498985
Coord C2 exon
chr2:120501211-120501324
Length
18 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCCCTTTCTATGCAGAAA
3' ss Score
10.67
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGCTGAAAATACAATCTCTGTGGATCGGCCAGTG
Seq A exon
AAAAAGAAAAAAAACAAG
Seq C2 exon
CCCATCATCTTCGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAGCAGGGCCCGAGAAACGAGGGGAAACCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'45-31,'45-29,46-31
Average complexity
C2
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.000 C2=0.763
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCTCTGTGGATCGGCCA
R:
CTGCTTTGTCTTTGCCCTCCT
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types