HsaEX6074174 @ hg38
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42408211-42409844:+
Coord C1 exon
chr15:42408211-42408324
Coord A exon
chr15:42409303-42409380
Coord C2 exon
chr15:42409787-42409844
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGTGCCTCCACAGCCA
3' ss Score
10.4
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAG
Seq A exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
Seq C2 exon
GACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'25-64,'25-60,30-64=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.720 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
PF134051=EF-hand_6=PU(28.2=42.3)
C2:
PF138331=EF-hand_8=PU(30.5=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCACCATGTTGGCCAGGA
R:
GGCGGCAGGAAGGATACATC
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains