GgaEX7005505 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24955900-24957244:+
Coord C1 exon
chr5:24955900-24956001
Coord A exon
chr5:24956607-24956684
Coord C2 exon
chr5:24957187-24957244
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTCACTTGTACCTTTCCAGCGT
3' ss Score
7.7
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CCTATCATCTTTGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGACAACAGACGAAGATGCTGGCAAAGATGGTGAAAAAACCCACGTAGATGAGAAAAAG
Seq A exon
CGTTCTTCAGCAAAAGCTCGTGAGAAGAGTGAAGAGGAAACTCAGTTCAGGAATATTTTCCGACAGATTGCAGGGGAT
Seq C2 exon
GACATGGAGATCAATGCCGAAGAACTCAGGAATGTTCTCAACAACGTTGTTAAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.615 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATCATCTTTGTTTCTGACAGAGC
R:
ACAACGTTGTTGAGAACATTCCTG
Band lengths:
152-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]