RnoEX6061180 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57367001-57370134:+
Coord C1 exon
chr19:57367001-57367037
Coord A exon
chr19:57368864-57368944
Coord C2 exon
chr19:57370077-57370134
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTTGGTTCTTTCAGCTT
3' ss Score
9.74
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGACCTGGATGAGAACATAGACATTGACCTTCCTGAG
Seq A exon
CTTCCAAAGCCGACACCACAGGAGGAGGAAACCGAAGAGGAGCGGCAGTTCCGGGCCCTGTTCCGTCGAATTGCTGGTGAG
Seq C2 exon
GACATGGAGGTGTCAGCAGAAGAGCTTGAATATGTTCTAAATGCTGTTCTGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'12-12,'12-11,15-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGGATGAGAACATAGACA
R:
TCTTTTGCAGAACAGCATTTAGAACA
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]