DreEX6033729 @ danRer10
Exon Skipping
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53229606-53231464:-
Coord C1 exon
chr1:53231428-53231464
Coord A exon
chr1:53231210-53231290
Coord C2 exon
chr1:53229606-53229663
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTCTACTTTTTGAAGCCA
3' ss Score
4.95
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGAGGTGGGAAACAAAATTGAAGCTGATCTGCCAGAG
Seq A exon
CCACCGAAACCAAACCCACCTGAAGAGGAGACTGATGAGGAGAAAGGCCTGAGGAAACTCTTTGAACAGGTCGCTGGACCG
Seq C2 exon
GATAATGTCATCAGCGCCAGAGAACTGCAGCACGTGCTGAACAATGTTCTGGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341-'13-14,'13-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.704 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGGGAAACAAAATTGAAGC
R:
TTCTTCCCAGAACATTGTTCAGCA
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]