GgaEX6030249 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39833175-39835378:+
Coord C1 exon
chr3:39833175-39833211
Coord A exon
chr3:39834713-39834793
Coord C2 exon
chr3:39835321-39835378
Length
81 bp
Sequences
Splice sites
3' ss Seq
TACTGTGGTTGACATTGCAGCCT
3' ss Score
3.55
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGATCTGGATGAAAATGTTGCCATTGATCTCCCCGAG
Seq A exon
CCTCCAAACCCAACCCCAAGTCCACAAGAATCTGAGGAAGAAAAGCAGTTCCGGGCACTGTTTGAGCAGATCTCAGGAAAG
Seq C2 exon
GACATGGAAGTAGCTGCAGAAGAACTTGAATATGTTCTAAATGCAGTATTAAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'12-12,'12-11,14-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGGATGAAAATGTTGCCA
R:
ACATATTCAAGTTCTTCTGCAGCT
Band lengths:
72-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]