MmuEX6039315 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124607955-124611560:+
Coord C1 exon
chr8:124607955-124607991
Coord A exon
chr8:124609093-124609173
Coord C2 exon
chr8:124611503-124611560
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTTTGGCTCTTTCAGCTT
3' ss Score
9.46
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGACCTGGACGAGAACATAGACATTGACCTTCCTGAG
Seq A exon
CTTCCAAAGCCGACTCCACAGGAGGAGGAAACAGAAGAGGAACAGCAGTTCCGGGCCCTGTTCCAGCGAGTTGCTGGCGAG
Seq C2 exon
GACATGGAGGTGTCAGCTGAGGAGCTTGAATATGTTCTAAATGCTGTTCTGCAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-'14-20,'14-15,17-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGGACGAGAACATAGAC
R:
TCTTCTGCAGAACAGCATTTAGA
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types