HsaEX0012389 @ hg38
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230785981-230790189:+
Coord C1 exon
chr1:230785981-230786017
Coord A exon
chr1:230787522-230787602
Coord C2 exon
chr1:230790132-230790189
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGGCTGTTTTTTAGCCT
3' ss Score
7.28
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGATATGGATGGAAATGTAGACATTGACCTTCCTGAG
Seq A exon
CCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAG
Seq C2 exon
GACATGGAGGTGACAGCAGAGGAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'20-17,'20-16,22-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.630 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
ENST00000271971fB11307
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATATGGATGGAAATGTAGACATTG
R:
TCTTTTGCAGCACAGCATTTAA
Band lengths:
95-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development