GgaEX6030249 @ galGal3
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
NA
Coordinates
chr3:42380589-42382792:+
Coord C1 exon
chr3:42380589-42380625
Coord A exon
chr3:42382127-42382207
Coord C2 exon
chr3:42382735-42382792
Length
81 bp
Sequences
Splice sites
3' ss Seq
TACTGTGGTTGACATTGCAGCCT
3' ss Score
3.55
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGATCTGGATGAAAATGTTGCCATTGATCTCCCCGAG
Seq A exon
CCTCCAAACCCAACCCCAAGTCCACAAGAATCTGAGGAAGAAAAGCAGTTCCGGGCACTGTTTGAGCAGATCTCAGGAAAG
Seq C2 exon
GACATGGAAGTAGCTGCAGAAGAACTTGAATATGTTCTAAATGCAGTATTAAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGGATGAAAATGTTGCCA
R:
ACATATTCAAGTTCTTCTGCAGCT
Band lengths:
72-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]