DreEX6056040 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45350086-45352963:+
Coord C1 exon
chr17:45350086-45350122
Coord A exon
chr17:45352657-45352770
Coord C2 exon
chr17:45352906-45352963
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAACTCTCATGTCTGATCAGCCT
3' ss Score
3.93
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGAGATAGAGAACAGGATTGAAGCTGATCATCCAGTG
Seq A exon
CCTTCTCCGGCTTCAACTGGGGAGGAGAGCGAAGAGGACCAACAGTTCCTGTCCATTTTCCAGCACATCGCGGGGGACGTGAGTACTGGGGAGGCAGTGAGCGCTTGGGGGAGT
Seq C2 exon
AACATGGAGGTCTCTGCCAACGAGCTTAAAGATGTCTTGAACAAGGTGGTGTCTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'18-17,'18-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.289 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATAGAGAACAGGATTGAAGCTG
R:
AGACACCACCTTGTTCAAGACA
Band lengths:
91-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]