HsaEX6074174 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42700409-42702042:+
Coord C1 exon
chr15:42700409-42700522
Coord A exon
chr15:42701501-42701578
Coord C2 exon
chr15:42701985-42702042
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGTGCCTCCACAGCCA
3' ss Score
10.4
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CCCATCATCTTCGTTTCGGACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGTCAGAGGAGGGCAAAGGCAAAACAAGCCCTGATAAGCAAAAGCAGTCCCCACAG
Seq A exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
Seq C2 exon
GACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'31-34,'31-33,32-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=0.721 C2=0.000
Domain overlap (PFAM):
C1:
PF156271=CEP76-C2=PD(19.0=50.0)
A:
PF038858=DUF327=FE(30.9=100),PF134051=EF-hand_6=PU(28.2=42.3)
C2:
PF138331=EF-hand_8=PU(30.5=94.7),PF0175117=Toprim=PU(14.9=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCATCTTCGTTTCGGACA
R:
TGTTCACGACTGTGTTAAGGACC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)