MmuEX6104183 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120496978-120502444:+
Coord C1 exon
chr2:120496978-120497014
Coord A exon
chr2:120502103-120502180
Coord C2 exon
chr2:120502387-120502444
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGTGTCCCTATAGCCA
3' ss Score
10.74
5' ss Seq
GACGTATGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGAAGCTGAAAATACAATCTCTGTGGATCGGCCAGTG
Seq A exon
CCAAGGCCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGAC
Seq C2 exon
GACATGGAGATCTGTGCAGATGAACTCAAGAATGTCCTCAACACAGTGGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'45-35,'45-34,52-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.731 C2=0.190
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTGAAAATACAATCTCTGTGG
R:
GTTTGTTCACCACTGTGTTGAGG
Band lengths:
95-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types